WO2014155262A1 - An image forming method of a fluorescent sample - Google Patents

An image forming method of a fluorescent sample Download PDF

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Publication number
WO2014155262A1
WO2014155262A1 PCT/IB2014/060057 IB2014060057W WO2014155262A1 WO 2014155262 A1 WO2014155262 A1 WO 2014155262A1 IB 2014060057 W IB2014060057 W IB 2014060057W WO 2014155262 A1 WO2014155262 A1 WO 2014155262A1
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WO
WIPO (PCT)
Prior art keywords
points
sub
sample
fluorescent
detecting
Prior art date
Application number
PCT/IB2014/060057
Other languages
French (fr)
Inventor
Daniela GANDOLFI
Jonathan MAPELLI
Egidio D'ANGELO
Paolo Pozzi
Original Assignee
Gandolfi Daniela
Mapelli Jonathan
D Angelo Egidio
Paolo Pozzi
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gandolfi Daniela, Mapelli Jonathan, D Angelo Egidio, Paolo Pozzi filed Critical Gandolfi Daniela
Priority to EP14723476.9A priority Critical patent/EP2979122A1/en
Priority to JP2016504800A priority patent/JP2016514837A/en
Priority to US14/778,351 priority patent/US20160054226A1/en
Publication of WO2014155262A1 publication Critical patent/WO2014155262A1/en

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Classifications

    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/0004—Microscopes specially adapted for specific applications
    • G02B21/002—Scanning microscopes
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6456—Spatial resolved fluorescence measurements; Imaging
    • G01N21/6458—Fluorescence microscopy
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/16—Microscopes adapted for ultraviolet illumination ; Fluorescence microscopes
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/36—Microscopes arranged for photographic purposes or projection purposes or digital imaging or video purposes including associated control and data processing arrangements
    • G02B21/365—Control or image processing arrangements for digital or video microscopes
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00—Features of devices classified in G01N21/00
    • G01N2201/06—Illumination; Optics
    • G01N2201/067—Electro-optic, magneto-optic, acousto-optic elements
    • G01N2201/0675—SLM

Definitions

  • the invention relates to a method of imaging a fluorescent sample using the technique known as two-photon fluorescence microscopy, which can be generally used to generate an image of the detected surface.
  • Fluorescence scanning is often performed using scan heads mounted to microscopes that can detect samples loaded with a fluorophore that allows detection of their edge and surface points, in other words, of their perimeter conformation in a detection plane.
  • this type of scans requires the use of a pulsating infrared laser beam which is focused into a very small volume of the sample to be scanned, of the order of a cubic micron.
  • the fluorescent dye If the fluorescent dye is present in this very small volume, it will emit a fluorescent light which is sensed by a camera or the like and transmitted to an apparatus that displays the fluorescence signal, e.g. on a display screen.
  • the whole surface of a sample can be only imaged by providing additional devices that form the scan head of the microscope and allow the laser beam to be moved in predetermined directions, typically along parallel overlapping rows, until the whole surface to be imaged is scanned, thereby obtaining the final image by capturing the individual fluorescence emissions of the fluorophore.
  • a larger scan of a sample surface may be also obtained using a device known as D.O.E. (Diffractive Optical Element), which provides appropriate phase modulation of the laser beam to divide it into a beam of parallel sub-beams which simultaneously illuminate multiple fluorescent points of a sample, thereby allowing a fixed distribution of points that may be used by an experimenter.
  • D.O.E. diffractive Optical Element
  • a first drawback is that microscope scan heads that can displace the laser beam for scanning all the points of the sample have a very high cost, due to their complex structure.
  • a second drawback concerning the use of the D.O.E. device is that, since the latter can only provide a fixed distribution of sub-beams, it must be associated with a beam displacing apparatus to obtain a final image having a sufficient resolution.
  • One object of the invention is to improve the prior art.
  • Another object of the invention is to provide a method of imaging a fluorescent sample that can provide images of the sample using a microscope that has no additional apparatus for displacing the scan beam over the sample surface that is required to be imaged for fluorescent point detection.
  • the invention provides a method of imaging a fluorescent sample as defined by the features of claim 1 .
  • the invention provides an apparatus for imaging a fluorescent sample as defined by the features of claim 4.
  • FIG. 1 is a first schematic example of a schematic view of a scan field, showing a first subset of points irradiated by a first distribution of scan beams;
  • FIG. 2 is a second schematic example of a schematic view of a scan field, showing a second subset of points, complementing the first subset, which are irradiated by a second distribution of scan beams;
  • FIG. 3 is a schematic example of a general view of a set of scannable fluorescent points
  • FIG. 4 is a third schematic example of a schematic view of a scan field, showing a third subset of points irradiated by a third distribution of scan beams;
  • FIG. 5 is a fourth schematic example of a schematic view of a scan field, showing a fourth subset of points irradiated by a fourth distribution of scan beams;
  • FIG. 6 is a fifth schematic example of a schematic view of a scan field, showing a fifth subset of points irradiated by a fifth distribution of scan beams;
  • FIG. 7 is a schematic example of a general view of an additional set of scannable fluorescent points
  • FIG. 8 is a general schematic view of a scanner apparatus for implementing the method of the invention.
  • FIG. 9 is a flow-chart of the steps of the method of the invention.
  • numeral 1 designates a sample element which, for example, is represented by a grid having rows “F1 -F7" and columns “C1 -C7" of cells that generally form a scan field 2, hereinafter briefly referred to as field 2, here a flat square geometric figure.
  • the illustrated grid may have any perimeter and composition and that, as mentioned above, it is merely a schematic, non-limiting example of a sample to be analyzed.
  • the scan field 2 contains a set of detectable points that have the common feature of being fluorescent and hence detectable when a scan beam, such as a laser beam 4, indicated with a broken line in Figure 8 and emitted by a source 5, impinges thereupon.
  • the laser beam 4 is modulated by a known S.L.M. (Spatial Light Modulator) device, referenced 10, which divides it into a first predetermined number of sub-beams 8A that form a first beam of scan laser sub-beams.
  • S.L.M. Spatial Light Modulator
  • first distribution of beams 8 When the first distribution of beams 8 irradiates the sample 1 in a first initial detection step, it generates a first subset of first detected points, conventionally indicated as small circle 9 in Figures 1 to 3, also referred to hereinafter as first points 9, on a first perpendicular scan plane, typically the plane "P1 " on which the field 2 lies.
  • This first subset of first scanned points provides a first part of the image (in pixels), which is transmitted to a display apparatus, schematically referenced 1 2 in Figure 8, which reproduces a first part of the overall image to be captured.
  • a second beam of detection laser sub-beams 8B is obtained, which is spatially different from the first beam 8A such that, when it irradiates the sample 1 in a later detection step, it will generate a second subset of second detected fluorescent points, conventionally indicated in the figures with cross symbols 1 1 , and hereinafter also referred to as second points 1 1 .
  • the number of second points 1 1 of the second subset complements the number of first points 9, to reach the total number of points that form the set of the detectable points of the field 2.
  • the second image part of this second subset is also sent to the display apparatus 1 2 which integrates it with the first previously captured part to form the whole image of the field 2 of the sample 1 .
  • three-dimensional images may be also captured and reproduced, by adjusting the focus of a lens 1 3 of a focusing apparatus 20 situated downstream from the S.L.M. device, through which the beams 8A and 8B pass.
  • the second subset of scanned points 1 1 is detected on a second plane "P2" other from the plane "P1 " and normally parallel thereto.
  • S.L.M. device is intended to mean that a phase distribution of the laser beam 8B is selected to perform a second detection, such that an illumination distribution selected by the experimenter and different from that of the beam
  • the step 1 00 indicates the start of the method of capturing/acquiring an image, followed by a step 1 01 of selecting the detection of a first subset of first detectable points 9 of a scan field 2.
  • the step 1 01 is followed by a further step 1 02, which is the starting step during which the first beam 8A of laser sub-beams is generated, using a hologram-template, by the S.L.M. device 1 0 which irradiates the sample in the first subset of the first selected points 9.
  • the first subset of detected points 9 is sent to the display means 1 2 along the flow line 1 04 that comes out of the selection step 1 1 0 and reaches the step 1 05, in which reconstruction of an image to be constructed and displayed starts.
  • a first part of an image to be constructed in the display means 1 2 is opened, and a pixel intensity is assigned to this first part, in the following step 107.
  • this first part of the detection method of the invention is repeated in a subsequent step for detection of at least one second subset of detectable points 1 1 , which defines a second part of the image to be constructed and which, like the previous one, is later sent to the step 1 05 and to those that follow, 1 06 and 1 07.
  • a selection step 1 1 is provided, in which the method is repeated from the step 1 06 for any further subset of detected points.
  • the method of the invention includes the image reconstruction step 1 1 3, which is followed by the step 1 14 of selecting the particular points of interest of the image reconstructed by joining the subsets of detected points 9 and 1 1 , the step 1 1 5 of generating a hologram template of the points of interest, the step 1 1 6 of programming the S.L.M. device 1 0 with the hologram template and the step 1 17 of capturing the image by a camera.
  • the invention has been found to fulfill the intended objects.

Abstract

A method of imaging a fluorescent sample comprising the steps of: scanning fluorescent points (9, 11) of said sample using scanner means (10, 8A, 88), thereby obtaining scanned fluorescent points; imaging said scanned fluorescent points on display means (12), said scanning comprising: predefining a scan field (2) for said sample, which comprises a set of scannable fluorescent points (9, 11); sequentially irradiating, using irradiation means (4, 8A, 8B), at least one first subset of points of said set of points and at least one second subset of said set of points, which complements said first subset with respect to said set of points. The first and second subsets can be irradiated at different focal irradiation distances (PI, P2).

Description

AN IMAGE FORMING METHOD OF A FLUORESCENT SAMPLE
Field of the Invention
The invention relates to a method of imaging a fluorescent sample using the technique known as two-photon fluorescence microscopy, which can be generally used to generate an image of the detected surface.
Background art
Fluorescence scanning is often performed using scan heads mounted to microscopes that can detect samples loaded with a fluorophore that allows detection of their edge and surface points, in other words, of their perimeter conformation in a detection plane.
More in detail, this type of scans requires the use of a pulsating infrared laser beam which is focused into a very small volume of the sample to be scanned, of the order of a cubic micron.
If the fluorescent dye is present in this very small volume, it will emit a fluorescent light which is sensed by a camera or the like and transmitted to an apparatus that displays the fluorescence signal, e.g. on a display screen.
Typically, since the surfaces to be imaged have usually much larger surface areas than that on which the laser beam is focused, the whole surface of a sample can be only imaged by providing additional devices that form the scan head of the microscope and allow the laser beam to be moved in predetermined directions, typically along parallel overlapping rows, until the whole surface to be imaged is scanned, thereby obtaining the final image by capturing the individual fluorescence emissions of the fluorophore.
A larger scan of a sample surface may be also obtained using a device known as D.O.E. (Diffractive Optical Element), which provides appropriate phase modulation of the laser beam to divide it into a beam of parallel sub-beams which simultaneously illuminate multiple fluorescent points of a sample, thereby allowing a fixed distribution of points that may be used by an experimenter.
When the illuminated points are fluorescent, fluorescence signals are generated, which are sent to a display device. Nevertheless, prior art devices suffer from certain drawbacks.
A first drawback is that microscope scan heads that can displace the laser beam for scanning all the points of the sample have a very high cost, due to their complex structure.
A second drawback concerning the use of the D.O.E. device is that, since the latter can only provide a fixed distribution of sub-beams, it must be associated with a beam displacing apparatus to obtain a final image having a sufficient resolution.
It should be noted that, theoretically, scans having a higher definition in terms of scanning points might be obtained by considerably increasing the number of points to be impinged upon by the laser beam, by changing its phase.
Nevertheless, this multiplication of points would cause a proportional increase of the power required to illuminate the sample, which is not currently available in any known laser source.
Disclosure of the invention
One object of the invention is to improve the prior art.
Another object of the invention is to provide a method of imaging a fluorescent sample that can provide images of the sample using a microscope that has no additional apparatus for displacing the scan beam over the sample surface that is required to be imaged for fluorescent point detection.
In one aspect, the invention provides a method of imaging a fluorescent sample as defined by the features of claim 1 .
In another aspect, the invention provides an apparatus for imaging a fluorescent sample as defined by the features of claim 4.
The invention achieves the following advantages:
- considerably simplifying the structure of scan heads mounted to microscopes for two-photon fluorescence microscopy imaging of a sample element;
- obtaining images with substantially the definition that can be obtained with prior art apparatus having a more complex and expensive structure.
Brief description of the drawings
Further features and advantages of the invention will be more readily apparent upon reading of the detailed description of a preferred non- exclusive embodiment of a method of imaging a fluorescent sample, which is shown as a non-limiting example by the annexed drawings, in which:
FIG. 1 is a first schematic example of a schematic view of a scan field, showing a first subset of points irradiated by a first distribution of scan beams;
FIG. 2 is a second schematic example of a schematic view of a scan field, showing a second subset of points, complementing the first subset, which are irradiated by a second distribution of scan beams;
FIG. 3 is a schematic example of a general view of a set of scannable fluorescent points;
FIG. 4 is a third schematic example of a schematic view of a scan field, showing a third subset of points irradiated by a third distribution of scan beams;
FIG. 5 is a fourth schematic example of a schematic view of a scan field, showing a fourth subset of points irradiated by a fourth distribution of scan beams;
FIG. 6 is a fifth schematic example of a schematic view of a scan field, showing a fifth subset of points irradiated by a fifth distribution of scan beams;
FIG. 7 is a schematic example of a general view of an additional set of scannable fluorescent points;
FIG. 8 is a general schematic view of a scanner apparatus for implementing the method of the invention;
FIG. 9 is a flow-chart of the steps of the method of the invention.
Detailed description of a preferred embodiment Referring now to Figures 1 to 3, numeral 1 designates a sample element which, for example, is represented by a grid having rows "F1 -F7" and columns "C1 -C7" of cells that generally form a scan field 2, hereinafter briefly referred to as field 2, here a flat square geometric figure.
The skilled person will understand that the illustrated grid may have any perimeter and composition and that, as mentioned above, it is merely a schematic, non-limiting example of a sample to be analyzed.
As shown in Figure 3, the scan field 2 contains a set of detectable points that have the common feature of being fluorescent and hence detectable when a scan beam, such as a laser beam 4, indicated with a broken line in Figure 8 and emitted by a source 5, impinges thereupon.
Before irradiating the field 2, the laser beam 4 is modulated by a known S.L.M. (Spatial Light Modulator) device, referenced 10, which divides it into a first predetermined number of sub-beams 8A that form a first beam of scan laser sub-beams.
When the first distribution of beams 8 irradiates the sample 1 in a first initial detection step, it generates a first subset of first detected points, conventionally indicated as small circle 9 in Figures 1 to 3, also referred to hereinafter as first points 9, on a first perpendicular scan plane, typically the plane "P1 " on which the field 2 lies.
This first subset of first scanned points provides a first part of the image (in pixels), which is transmitted to a display apparatus, schematically referenced 1 2 in Figure 8, which reproduces a first part of the overall image to be captured.
By making changes in the program for spatially composing and organizing the laser beam emitted by the S.L.M. device 1 0 of the invention, a second beam of detection laser sub-beams 8B is obtained, which is spatially different from the first beam 8A such that, when it irradiates the sample 1 in a later detection step, it will generate a second subset of second detected fluorescent points, conventionally indicated in the figures with cross symbols 1 1 , and hereinafter also referred to as second points 1 1 .
As noted with reference to Figure 3, in this exemplary case the number of second points 1 1 of the second subset complements the number of first points 9, to reach the total number of points that form the set of the detectable points of the field 2.
The second image part of this second subset is also sent to the display apparatus 1 2 which integrates it with the first previously captured part to form the whole image of the field 2 of the sample 1 .
It shall be noted that, according to the invention, three-dimensional images may be also captured and reproduced, by adjusting the focus of a lens 1 3 of a focusing apparatus 20 situated downstream from the S.L.M. device, through which the beams 8A and 8B pass.
In this case, the second subset of scanned points 1 1 is detected on a second plane "P2" other from the plane "P1 " and normally parallel thereto.
Repeated scans on multiple planes with changed focus allows capture of images that are transmitted to the display apparatus 1 2 to reconstruct a three-dimensional image thereon.
It shall be noted that the term "making changes in the program of the
S.L.M. device" is intended to mean that a phase distribution of the laser beam 8B is selected to perform a second detection, such that an illumination distribution selected by the experimenter and different from that of the beam
8A as used for the first detection is obtained on the plane of sample to be analyzed.
Referring to Figure 9, a flowchart is shown, which illustrates the sequence of steps of the method of imaging a sample according to the invention.
Particularly, the step 1 00 indicates the start of the method of capturing/acquiring an image, followed by a step 1 01 of selecting the detection of a first subset of first detectable points 9 of a scan field 2.
The step 1 01 is followed by a further step 1 02, which is the starting step during which the first beam 8A of laser sub-beams is generated, using a hologram-template, by the S.L.M. device 1 0 which irradiates the sample in the first subset of the first selected points 9.
In the next step 103, the first subset of detected points 9 is sent to the display means 1 2 along the flow line 1 04 that comes out of the selection step 1 1 0 and reaches the step 1 05, in which reconstruction of an image to be constructed and displayed starts.
In the next step 1 06, a first part of an image to be constructed in the display means 1 2 is opened, and a pixel intensity is assigned to this first part, in the following step 107.
As shown by the flow line 1 08 that comes out of the selection step 1 1 0, as an alternative to the flow line 1 04, this first part of the detection method of the invention is repeated in a subsequent step for detection of at least one second subset of detectable points 1 1 , which defines a second part of the image to be constructed and which, like the previous one, is later sent to the step 1 05 and to those that follow, 1 06 and 1 07.
After this step 1 07, once pixel intensities have been assigned to at least both the detected image parts, a selection step 1 1 is provided, in which the method is repeated from the step 1 06 for any further subset of detected points.
Once all the subsets of detectable points have been detected, after the flow line 1 1 2 the method of the invention includes the image reconstruction step 1 1 3, which is followed by the step 1 14 of selecting the particular points of interest of the image reconstructed by joining the subsets of detected points 9 and 1 1 , the step 1 1 5 of generating a hologram template of the points of interest, the step 1 1 6 of programming the S.L.M. device 1 0 with the hologram template and the step 1 17 of capturing the image by a camera.
The invention has been found to fulfill the intended objects.
The invention so conceived is susceptible to changes and variants within the inventive concept.
Also, all the details may be replaced by other technical equivalent elements.
In its practical implementation, any material, shape and size may be used as needed, without departure from the scope as defined by the following claims.

Claims

1 . An image forming method of a fluorescent sample comprising, the steps of:
- To detect fluorescent points (9, 1 1 ) of said sample by detecting means (1 0, 8A, 8B), obtaining therefrom detected fluorescent points;
- To form images of said detected fluorescent points on displaying means (1 2);
characterized in that said to detect comprises:
- To pre-define a scanning field (2) of said sample which comprises a set of fluorescent detectable points (9, 1 1 );
- To irradiate statically in a first initial step at least a first sub-set of first points (9) of said set of detectable points by first irradiating means (8A) generated by an irradiation device (1 0);
- To reset said irradiation device (1 0), so as to generate second irradiating means (8B) different from said first irradiating means (8A);
- To irradiate statically in a subsequent irradiation step at least a second sub-set of second points (1 1 ) of said set of detectable points by said second irradiating means (8B) generated by said reset irradiation device (1 0), which are different from said first points (9) and that form said set of detectable points when added to said first sub-set;
- To complete an image on said displaying means (1 2) by supplementing reciprocally said first sub-set and second sub-set of detected points.
2. A method as claimed in claim 1 , wherein said first irradiating means comprise a first beam (8A) of detecting laser rays which define a first detecting net comprising said first sub-set of points and said second irradiating means comprise at least a second beam (8B) of detecting laser rays which define a second detecting net comprising said second sub-set of points, said first beam (8A) and second beam (8B) of laser rays being generated by said irradiating device (1 0).
3. A method as claimed in claim 1 , wherein said irradiating device comprises a spatial light modulator (1 0).
4. A method as claimed in claim 1 , wherein said to irradiate comprises to irradiate said first sub-set at a first focal irradiation distance (P1 ) with respect to said sample and to irradiate said second sub-set at a second focal irradiation distance (P2) with respect of said sample, different from said first distance (P1 ).
5. A method as claimed in anyone of preceding claims, wherein said first sub-set and second sub-set are reciprocally supplemental with respect of said set of detectable points.
6. An image generating apparatus of a fluorescent sample, characterized in that it comprises:
A source (5) of detecting ray means (4);
A spatial light modulator 810) equipped with phase modulation means, designed to modify the phase of said detecting ray means (4) into at least a first beam (8A) of detecting sub-rays of a first sub-set of detectable points (9) and into a second beam (8B) of detecting sub-rays of a second sub-set of detectable points (1 1 ) of said sample.
PCT/IB2014/060057 2013-03-25 2014-03-22 An image forming method of a fluorescent sample WO2014155262A1 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
EP14723476.9A EP2979122A1 (en) 2013-03-25 2014-03-22 An image forming method of a fluorescent sample
JP2016504800A JP2016514837A (en) 2013-03-25 2014-03-22 Method for forming image of fluorescent sample
US14/778,351 US20160054226A1 (en) 2013-03-25 2014-03-22 An image forming method of a fluorescent sample

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
ITMO20130478 2013-03-25
ITMO213A000078 2013-03-25

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Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5923466A (en) * 1993-10-20 1999-07-13 Biophysica Technologies, Inc. Light modulated confocal optical instruments and method
US20030021016A1 (en) * 2001-07-27 2003-01-30 Grier David G. Parallel scanned laser confocal microscope
US20060209399A1 (en) * 2005-02-28 2006-09-21 Yokogawa Electric Corporation Confocal microscope
WO2011023593A1 (en) * 2009-08-24 2011-03-03 INSERM (Institut National de la Santé et de la Recherche Médicale) Method of and apparatus for imaging a cellular sample

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5923466A (en) * 1993-10-20 1999-07-13 Biophysica Technologies, Inc. Light modulated confocal optical instruments and method
US20030021016A1 (en) * 2001-07-27 2003-01-30 Grier David G. Parallel scanned laser confocal microscope
US20060209399A1 (en) * 2005-02-28 2006-09-21 Yokogawa Electric Corporation Confocal microscope
WO2011023593A1 (en) * 2009-08-24 2011-03-03 INSERM (Institut National de la Santé et de la Recherche Médicale) Method of and apparatus for imaging a cellular sample

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