WO2008022332A3 - System, method and kit for replicating a dna array - Google Patents

System, method and kit for replicating a dna array Download PDF

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Publication number
WO2008022332A3
WO2008022332A3 PCT/US2007/076244 US2007076244W WO2008022332A3 WO 2008022332 A3 WO2008022332 A3 WO 2008022332A3 US 2007076244 W US2007076244 W US 2007076244W WO 2008022332 A3 WO2008022332 A3 WO 2008022332A3
Authority
WO
WIPO (PCT)
Prior art keywords
oligonucleotides
replicating
kit
biotin
dna array
Prior art date
Application number
PCT/US2007/076244
Other languages
French (fr)
Other versions
WO2008022332A2 (en
Inventor
Richard M Crooks
Kim Joohoon
Li Sun
Haohao Lin
Original Assignee
Univ Texas
Richard M Crooks
Kim Joohoon
Li Sun
Haohao Lin
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ Texas, Richard M Crooks, Kim Joohoon, Li Sun, Haohao Lin filed Critical Univ Texas
Publication of WO2008022332A2 publication Critical patent/WO2008022332A2/en
Publication of WO2008022332A3 publication Critical patent/WO2008022332A3/en

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Abstract

The present invention includes methods, systems and kits for replicating an oligonucleotide array. The replication includes hybridizing one or more biotin-functionalized oligonucleotides to one or more oligonucleotides on a first substrate and capturing the one or more biotin-functionalized oligonucleotides with streptavidin attached to a second substrate. The one or more biotin- functionalized oligonucleotides may be separated from the one or more oligonucleotides by mechanical force to form a replicated array.
PCT/US2007/076244 2006-08-18 2007-08-17 System, method and kit for replicating a dna array WO2008022332A2 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US83854206P 2006-08-18 2006-08-18
US60/838,542 2006-08-18

Publications (2)

Publication Number Publication Date
WO2008022332A2 WO2008022332A2 (en) 2008-02-21
WO2008022332A3 true WO2008022332A3 (en) 2008-10-09

Family

ID=39083187

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2007/076244 WO2008022332A2 (en) 2006-08-18 2007-08-17 System, method and kit for replicating a dna array

Country Status (1)

Country Link
WO (1) WO2008022332A2 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102449164B (en) * 2009-03-06 2016-05-25 弗赖堡阿尔伯特-路德维格大学 Prepare apparatus and method and the application thereof of duplicate or derivative from molecular array

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US20190300945A1 (en) 2010-04-05 2019-10-03 Prognosys Biosciences, Inc. Spatially Encoded Biological Assays
US10787701B2 (en) 2010-04-05 2020-09-29 Prognosys Biosciences, Inc. Spatially encoded biological assays
JP5893607B2 (en) 2010-04-05 2016-03-23 プログノシス バイオサイエンシズ インコーポレイテッドＰｒｏｇｎｏｓｙｓ Ｂｉｏｓｃｉｅｎｃｅｓ，Ｉｎｃ． Spatial-encoded biological assay
GB201106254D0 (en) 2011-04-13 2011-05-25 Frisen Jonas Method and product
GB201108041D0 (en) 2011-05-13 2011-06-29 Univ Portsmouth Method
DE102011054101A1 (en) 2011-09-30 2013-04-04 Albert-Ludwigs-Universität Freiburg Method for the spatial arrangement of sample fragments for amplification and immobilization for further derivatizations
DE102011085473A1 (en) 2011-10-28 2013-05-02 Albert-Ludwigs-Universität Freiburg Method for the identification of aptamers
DE102012100824A1 (en) * 2012-02-01 2013-09-05 Albert-Ludwigs-Universität Freiburg Multiplexed Digital PCR
EP2647426A1 (en) * 2012-04-03 2013-10-09 Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V. Replication of distributed nucleic acid molecules with preservation of their relative distribution through hybridization-based binding
JP6355627B2 (en) * 2012-06-14 2018-07-11 アルベルト−ルートヴィヒ−ウニベルシタット フライブルク Array-based analysis method
WO2014210225A1 (en) 2013-06-25 2014-12-31 Prognosys Biosciences, Inc. Methods and systems for determining spatial patterns of biological targets in a sample
WO2015085274A1 (en) 2013-12-05 2015-06-11 Centrillion Technology Holdings Corporation Methods for sequencing nucleic acids
EP3628747B1 (en) 2013-12-05 2022-10-05 Centrillion Technology Holdings Corporation Fabrication of patterned arrays
CN105940024B (en) 2013-12-05 2019-03-15 生捷科技控股公司 The surface of modification
US11060139B2 (en) 2014-03-28 2021-07-13 Centrillion Technology Holdings Corporation Methods for sequencing nucleic acids
WO2016004171A1 (en) 2014-07-03 2016-01-07 Centrillion Technology Holdings Corporation Device for storage and dispensing of reagents
US10774374B2 (en) 2015-04-10 2020-09-15 Spatial Transcriptomics AB and Illumina, Inc. Spatially distinguished, multiplex nucleic acid analysis of biological specimens
EP3527672B1 (en) * 2015-06-09 2022-10-05 Centrillion Technology Holdings Corporation Oligonucleotide arrays for sequencing nucleic acids
EP3112018A1 (en) 2015-07-02 2017-01-04 Centrillion Technology Holdings Corporation Systems and methods to dispense and mix reagents
US11408028B2 (en) 2017-02-08 2022-08-09 Essenlix Corporation Nucleic acid hybridization assay
EP3793720A1 (en) 2018-05-15 2021-03-24 Biocopy GmbH Microarray transformer
US20230323447A1 (en) * 2018-08-28 2023-10-12 10X Genomics, Inc. Method for transposase-mediated spatial tagging and analyzing genomic dna in a biological sample
WO2020123316A2 (en) * 2018-12-10 2020-06-18 10X Genomics, Inc. Methods for determining a location of a biological analyte in a biological sample
US11926867B2 (en) 2019-01-06 2024-03-12 10X Genomics, Inc. Generating capture probes for spatial analysis
US11649485B2 (en) 2019-01-06 2023-05-16 10X Genomics, Inc. Generating capture probes for spatial analysis
US11712177B2 (en) 2019-08-12 2023-08-01 Essenlix Corporation Assay with textured surface
FI3891300T3 (en) 2019-12-23 2023-05-10 10X Genomics Inc Methods for spatial analysis using rna-templated ligation
US11821035B1 (en) 2020-01-29 2023-11-21 10X Genomics, Inc. Compositions and methods of making gene expression libraries
EP4242325A3 (en) 2020-04-22 2023-10-04 10X Genomics, Inc. Methods for spatial analysis using targeted rna depletion
EP4153776A1 (en) 2020-05-22 2023-03-29 10X Genomics, Inc. Spatial analysis to detect sequence variants
WO2022092651A1 (en) * 2020-10-27 2022-05-05 한국과학기술원 Nucleic acid-mediated pattern duplication and method for manufacturing two-dimensional material using same
DE102021109811B3 (en) 2021-04-19 2022-09-22 Biocopy Gmbh Process for the production of complex arrays
WO2024015766A1 (en) * 2022-07-12 2024-01-18 Topogene Inc. Scalable, submicron-resolution replication of dna arrays

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5795714A (en) * 1992-11-06 1998-08-18 Trustees Of Boston University Method for replicating an array of nucleic acid probes
US6511803B1 (en) * 1997-10-10 2003-01-28 President And Fellows Of Harvard College Replica amplification of nucleic acid arrays
US20060029961A1 (en) * 2004-08-04 2006-02-09 Goh M C Patterned surfaces and their use in diffraction-based sensing

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5795714A (en) * 1992-11-06 1998-08-18 Trustees Of Boston University Method for replicating an array of nucleic acid probes
US6511803B1 (en) * 1997-10-10 2003-01-28 President And Fellows Of Harvard College Replica amplification of nucleic acid arrays
US20060029961A1 (en) * 2004-08-04 2006-02-09 Goh M C Patterned surfaces and their use in diffraction-based sensing

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102449164B (en) * 2009-03-06 2016-05-25 弗赖堡阿尔伯特-路德维格大学 Prepare apparatus and method and the application thereof of duplicate or derivative from molecular array
CN106011238A (en) * 2009-03-06 2016-10-12 弗赖堡阿尔伯特-路德维格大学 Device and method for producing a replicate or derivative from an array of molecules, and applications thereof

Also Published As

Publication number Publication date
WO2008022332A2 (en) 2008-02-21

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