WO2002072783A3 - Identification of cellular targets for biologically active molecules - Google Patents

Identification of cellular targets for biologically active molecules Download PDF

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Publication number
WO2002072783A3
WO2002072783A3 PCT/US2002/007713 US0207713W WO02072783A3 WO 2002072783 A3 WO2002072783 A3 WO 2002072783A3 US 0207713 W US0207713 W US 0207713W WO 02072783 A3 WO02072783 A3 WO 02072783A3
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WO
WIPO (PCT)
Prior art keywords
identification
biologically active
active molecules
cellular targets
small molecule
Prior art date
Application number
PCT/US2002/007713
Other languages
French (fr)
Other versions
WO2002072783A2 (en
Inventor
Jeremy S Caldwell
Sumit K Chanda
Nikunj V Somia
John B Hogenesch
Michael P Cooke
Pedro Aza-Blanc
Original Assignee
Irm Llc
Jeremy S Caldwell
Sumit K Chanda
Nikunj V Somia
John B Hogenesch
Michael P Cooke
Pedro Aza-Blanc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Irm Llc, Jeremy S Caldwell, Sumit K Chanda, Nikunj V Somia, John B Hogenesch, Michael P Cooke, Pedro Aza-Blanc filed Critical Irm Llc
Priority to AU2002254212A priority Critical patent/AU2002254212A1/en
Publication of WO2002072783A2 publication Critical patent/WO2002072783A2/en
Publication of WO2002072783A3 publication Critical patent/WO2002072783A3/en

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1079Screening libraries by altering the phenotype or phenotypic trait of the host

Abstract

A genetic screening methodology for rapid identification of candidate targets of any small molecule cellular effectors and other signals and modulators of cellular functions and pathways is provided. The effect of a small molecule or other signal on a cell is titrated by expressing within the cell cDNA that encodes a polypeptide that is the molecular target or that is responsible for directly or indirectly producing the molecular target.
PCT/US2002/007713 2001-03-12 2002-03-12 Identification of cellular targets for biologically active molecules WO2002072783A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2002254212A AU2002254212A1 (en) 2001-03-12 2002-03-12 Identification of cellular targets for biologically active molecules

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US27526601P 2001-03-12 2001-03-12
US60/275,266 2001-03-12

Publications (2)

Publication Number Publication Date
WO2002072783A2 WO2002072783A2 (en) 2002-09-19
WO2002072783A3 true WO2002072783A3 (en) 2003-04-10

Family

ID=23051541

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2002/007713 WO2002072783A2 (en) 2001-03-12 2002-03-12 Identification of cellular targets for biologically active molecules

Country Status (3)

Country Link
US (1) US20030170642A1 (en)
AU (1) AU2002254212A1 (en)
WO (1) WO2002072783A2 (en)

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040043386A1 (en) * 2002-08-30 2004-03-04 Todd Pray Methods and compositions for functional ubiquitin assays
US20040248299A1 (en) * 2002-12-27 2004-12-09 Sumedha Jayasena RNA interference
WO2005031002A2 (en) * 2003-09-22 2005-04-07 Rosetta Inpharmatics Llc Synthetic lethal screen using rna interference
US20050287668A1 (en) * 2003-11-04 2005-12-29 Cell Therapeutics, Inc. (Cti) RNA interference compositions and screening methods for the identification of novel genes and biological pathways
KR101147147B1 (en) 2004-04-01 2012-05-25 머크 샤프 앤드 돔 코포레이션 Modified polynucleotides for reducing off-target effects in rna interference
JP2007532136A (en) * 2004-04-15 2007-11-15 ロゼッタ インファーマティックス エルエルシー Methods for identifying genes that mediate the response of living cells to agents
US7935811B2 (en) 2004-11-22 2011-05-03 Dharmacon, Inc. Apparatus and system having dry gene silencing compositions
US7923207B2 (en) * 2004-11-22 2011-04-12 Dharmacon, Inc. Apparatus and system having dry gene silencing pools
US20060166234A1 (en) 2004-11-22 2006-07-27 Barbara Robertson Apparatus and system having dry control gene silencing compositions
WO2006113679A2 (en) * 2005-04-15 2006-10-26 Board Of Regents, The University Of Texas System Delivery of sirna by neutral lipid compositions
EP1905827A1 (en) * 2006-09-20 2008-04-02 Institut Pasteur Korea A method of detecting and/or quantifying expression of a target protein candidate in a cell, and a method of identifying a target protein of a small molecule modulator
WO2008036825A2 (en) 2006-09-22 2008-03-27 Dharmacon, Inc. Duplex oligonucleotide complexes and methods for gene silencing by rna interference
US8188060B2 (en) 2008-02-11 2012-05-29 Dharmacon, Inc. Duplex oligonucleotides with enhanced functionality in gene regulation
US20100183558A1 (en) * 2008-10-17 2010-07-22 Zhennan Lai Safe lentiviral vectors for targeted delivery of multiple therapeutic molecules

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5654150A (en) * 1995-06-07 1997-08-05 President And Fellows Of Harvard College Method of expression cloning
WO1999025876A1 (en) * 1997-11-17 1999-05-27 Cytos Biotechnology Gmbh Expression cloning processes for the discovery, characterization and isolation of genes encoding polypeptides with a predetermined property
WO1999031277A1 (en) * 1997-12-15 1999-06-24 Medical Science Systems, Inc. Expression cloning and single cell detection of phenotype
WO1999055886A1 (en) * 1998-04-24 1999-11-04 Genova Pharmaceuticals Corporation Function-based gene discovery

Family Cites Families (37)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6664A (en) * 1849-08-21 Andrew fife
US5000185A (en) * 1986-02-28 1991-03-19 Cardiovascular Imaging Systems, Inc. Method for intravascular two-dimensional ultrasonography and recanalization
US5273876A (en) * 1987-06-26 1993-12-28 Syntro Corporation Recombinant human cytomegalovirus containing foreign gene
US6140111A (en) * 1987-12-11 2000-10-31 Whitehead Institute For Biomedical Research Retroviral gene therapy vectors and therapeutic methods based thereon
US5389069A (en) * 1988-01-21 1995-02-14 Massachusetts Institute Of Technology Method and apparatus for in vivo electroporation of remote cells and tissue
DE68927996T2 (en) * 1988-02-05 1997-12-04 Whitehead Biomedical Inst MODIFIED HEPATOCYTES AND THEIR USE
FR2629469B1 (en) * 1988-03-31 1990-12-21 Pasteur Institut DEFECTIVE RECOMBINANT RETROVIRUS, ITS APPLICATION TO THE INTEGRATION OF CODING SEQUENCES FOR PROTEINS DETERMINED IN THE GENOME OF CORRESPONDING WILD RETROVIRUS INFECTIOUS CELLS AND RECOMBINANT DNA FOR THE PRODUCTION OF THIS RECOMBINANT RETROVIRUS
JPH04503306A (en) * 1989-02-01 1992-06-18 ザ・ジェネラル・ホスピタル・コーポレーション Herpes simplex virus type 1 expression vector
US5143854A (en) * 1989-06-07 1992-09-01 Affymax Technologies N.V. Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof
US5215899A (en) * 1989-11-09 1993-06-01 Miles Inc. Nucleic acid amplification employing ligatable hairpin probe and transcription
US5658772A (en) * 1989-12-22 1997-08-19 E. I. Du Pont De Nemours And Company Site-specific recombination of DNA in plant cells
GB9105383D0 (en) * 1991-03-14 1991-05-01 Immunology Ltd An immunotherapeutic for cervical cancer
US5501662A (en) * 1992-05-22 1996-03-26 Genetronics, Inc. Implantable electroporation method and apparatus for drug and gene delivery
US5507724A (en) * 1992-07-01 1996-04-16 Genetronics, Inc. Electroporation and iontophoresis apparatus and method for insertion of drugs and genes into cells
US5318515A (en) * 1992-08-17 1994-06-07 Wilk Peter J Intravenous flow regulator device and associated method
US5334761A (en) * 1992-08-28 1994-08-02 Life Technologies, Inc. Cationic lipids
AU6014094A (en) * 1992-12-02 1994-06-22 Baylor College Of Medicine Episomal vectors for gene therapy
US5527695A (en) * 1993-01-29 1996-06-18 Purdue Research Foundation Controlled modification of eukaryotic genomes
US5993434A (en) * 1993-04-01 1999-11-30 Genetronics, Inc. Method of treatment using electroporation mediated delivery of drugs and genes
WO1995013377A1 (en) * 1993-11-12 1995-05-18 Case Western Reserve University Episomal expression vector for human gene therapy
US5539083A (en) * 1994-02-23 1996-07-23 Isis Pharmaceuticals, Inc. Peptide nucleic acid combinatorial libraries and improved methods of synthesis
CA2117668C (en) * 1994-03-09 2005-08-09 Izumu Saito Recombinant adenovirus and process for producing the same
US5604090A (en) * 1994-06-06 1997-02-18 Fred Hutchinson Cancer Research Center Method for increasing transduction of cells by adeno-associated virus vectors
US5693508A (en) * 1994-11-08 1997-12-02 Chang; Lung-Ji Retroviral expression vectors containing MoMLV/CMV-IE/HIV-TAR chimeric long terminal repeats
JP3770333B2 (en) * 1995-03-15 2006-04-26 大日本住友製薬株式会社 Recombinant DNA virus and method for producing the same
US6051429A (en) * 1995-06-07 2000-04-18 Life Technologies, Inc. Peptide-enhanced cationic lipid transfections
JP4338106B2 (en) * 1995-06-07 2009-10-07 ライフ テクノロジーズ コーポレーション Peptide enhanced cationic lipid transfection
NZ312332A (en) * 1995-06-07 2000-01-28 Life Technologies Inc Recombinational cloning using engineered recombination sites
US6013516A (en) * 1995-10-06 2000-01-11 The Salk Institute For Biological Studies Vector and method of use for nucleic acid delivery to non-dividing cells
US5676751A (en) * 1996-01-22 1997-10-14 Memc Electronic Materials, Inc. Rapid cooling of CZ silicon crystal growth system
DE19602486C1 (en) * 1996-01-24 1997-06-12 Elkem Materials Briquette containing silicon-containing residues as an additive for metallurgical purposes and process for its production
US6103479A (en) * 1996-05-30 2000-08-15 Cellomics, Inc. Miniaturized cell array methods and apparatus for cell-based screening
EP0914444A1 (en) * 1996-06-06 1999-05-12 Novartis AG Vectors comprising sar elements
US5944710A (en) * 1996-06-24 1999-08-31 Genetronics, Inc. Electroporation-mediated intravascular delivery
US5955275A (en) * 1997-02-14 1999-09-21 Arcaris, Inc. Methods for identifying nucleic acid sequences encoding agents that affect cellular phenotypes
AU765703B2 (en) * 1998-03-27 2003-09-25 Bruce J. Bryan Luciferases, fluorescent proteins, nucleic acids encoding the luciferases and fluorescent proteins and the use thereof in diagnostics, high throughput screening and novelty items
US6027488A (en) * 1998-06-03 2000-02-22 Genetronics, Inc. Flow-through electroporation system for ex vivo gene therapy

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5654150A (en) * 1995-06-07 1997-08-05 President And Fellows Of Harvard College Method of expression cloning
WO1999025876A1 (en) * 1997-11-17 1999-05-27 Cytos Biotechnology Gmbh Expression cloning processes for the discovery, characterization and isolation of genes encoding polypeptides with a predetermined property
WO1999031277A1 (en) * 1997-12-15 1999-06-24 Medical Science Systems, Inc. Expression cloning and single cell detection of phenotype
WO1999055886A1 (en) * 1998-04-24 1999-11-04 Genova Pharmaceuticals Corporation Function-based gene discovery

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
FRASER ET AL.: "Functional genomic analysis of C. Elegans chromosome I by systematic RNA interference", NATURE, vol. 408, 16 November 2000 (2000-11-16), pages 325 - 330, XP002953443 *
GONCZY ET AL.: "Functional genomic analysis of cell division in C. Elegans using RNAi of genes on chromosome III", NATURE, vol. 408, 16 November 2000 (2000-11-16), pages 331 - 336, XP002953444 *
HOOPER ET AL.: "CCD imaging of luciferase gene expression in single mammalian cells", J. BIOLUMINESCENCE AND CHEMILUMINESCENCE, vol. 5, 1990, pages 123 - 130, XP000186189 *
KIMCHI, A.: "DAP genes: novel apoptotic genes isolated by a functional approach to gene cloning", BIOCHIM. BIOPHYS. ACTA, vol. 1377, 1998, pages F13 - F33, XP002953441 *
KISSIL ET AL.: "Isolation of DAP3, a novel mediator of interferon-gamma-induced cell death", J. BIOL. CHEM., vol. 270, 17 November 1995 (1995-11-17), pages 27932 - 27936, XP002953442 *
MAEDA ET AL.: "Large-scale analysis of gene function in caenorhabditis elegans by high-throughput RNAi", CURR. BIOL., vol. 11, no. 3, 2001, pages 171 - 176, XP002953445 *

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AU2002254212A1 (en) 2002-09-24
WO2002072783A2 (en) 2002-09-19
US20030170642A1 (en) 2003-09-11

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